Qualified for all branches of service if waiver received?

I am currently a candidate for USAFA (nomination) and USNA (no nomination sadly). My #1 choice is to attend USNA to become a Marine Corps pilot and fly MV-22 Ospreys. I am, however, disqualified medically for my past history of asthma (take no medication, no attack since 4, and have a doctors note so I believe it will be waived) and being allergic to dairy. I may or may not decline an appointment to USAFA, if I am offered one, to achieve my dream of attending USNA to become a Marine Corps...

Qualified for all branches of service if waiver received?